rs36467682 SNP Detail

Summary

• ID
  rs36467682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113417199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAAGACCT CCAATGAGAC AGCTCCCAGC AGCTTAGCTC
  CTTCTCAAGG CAAAGGCAGG GATGCAAGGG GTGAGTGGGA ACAGCTCAGA CCCTTTGCTA
  R
  TTTTTTCTGA GTTAGGCAGG GACAAGCAAG TGTCAGGATT TGGAGGGGGA CTGAAGGGTG
  GGTGGGAAAG GAGATCAGCA AATATGCTGG AAATGACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50460069	NES14118564	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	A	A		A	A	A	A		A
ss145683911	ENSMUSSNP1671553	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss322424751	CHEV_7_120961480	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36467682					SNP	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460069	NES14118564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113417199 () rs orientation: forward

Symbol	Name	Function Class
Rr653874	regulatory region 653874	771 bp distal
Rr653875	regulatory region 653875	156 bp proximal
Rr653876	regulatory region 653876	1886 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr74335	transcription start site region 74335	974 bp upstream