rs36467949 SNP Detail

Summary

• ID
  rs36467949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCACAG CTGGGAAACA
  AGGGTTCAAA CACCACTAAT TCAGGGAAGA AAGGCCACAC TCACAGATCT CCAACACAGT
  AAGTTTCTCT GTGAGTTTCC TGGGCCTCCA AGCCTCTCTT CTGTTACAAG GGACTGCTTC
  GATCCAGCAG AAAAGCTACA GGATCTGTGG GACAGGCAGA TGAGAAGTCA AGCTCCCCAC
  Y
  TCAGGTTCAT TTTCAAGACT TTGTAGGGGC TGCTGCAGTG ACTGAGCAGA GGGCAGAGGC
  AAGCAAGGTA AAGACAGGAG GGCTGATGTC TCTGAGCTCG GTACTGCTGG GTCACATGGA
  GGTGGAGATG GCATGATAAG GGAAACAGGA CAAAGAGGCA GCCCAGCTCG CATCCTGGAG
  GGCCCTGTGC ACCACACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51776931	NES14544636	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36467949					SNP	T	C	C	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776931	NES14544636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440369 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	937 bp downstream
Gm7541	predicted gene 7541	681 bp downstream
Gm9851	predicted gene 9851	1287 bp upstream
Gm55031	predicted gene, 55031	658 bp downstream
Tssr139859	transcription start site region 139859	1422 bp downstream