rs36471129 SNP Detail

Summary

• ID
  rs36471129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:75153745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAATGCTT TCTCACATCC
  CATTTCCAGC TCTGACGAGG CCAGTTTAGT TCTTTCTGCC TTCCTCCTCA AGCGCATTCT
  CCTTCACGAT TATCTTAAAG TAACGGTGAA GTGTAGCTTT TCAGTAGTAC CCGCAGGAGG
  CTGAGGTTCA GGGCTCCTCT TTTGATATCA ATACAATACC ACCGGCATAC TTCGAACACT
  R
  ACTTCTCAAT GTCATCGATA TCTAGAGGGA CTTTGTTGTT AAAGGTTGGC ACCCTTTAAG
  ATTGTATATA TCTTGGTGGA AGAGTAGTTT GAGCGCAGGA AGGGAGCACT GGGCAGGAAC
  TAGATGGAGC ACTGCTCTCC TCCAGATCCA TTTGATAAGA AGGGGGTTGA GCAGTACAAA
  CTCAGCTGTG TGTCTCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50499170	NES13702187	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36471129					SNP	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50499170	NES13702187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:75153745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10229	CpG island 10229	1109 bp distal
Dym	dymeclin	within coordinates
Rr405742	regulatory region 405742	1919 bp downstream
Rr540715	regulatory region 540715	1868 bp distal
Rr540716	regulatory region 540716	802 bp distal
Rr540717	regulatory region 540717	366 bp proximal
Rr540718	regulatory region 540718	1001 bp proximal
Tssr151951	transcription start site region 151951	1974 bp downstream
Tssr151952	transcription start site region 151952	1858 bp downstream
Tssr151953	transcription start site region 151953	1740 bp downstream