rs36472939 SNP Detail

Summary

• ID
  rs36472939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143352686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTTC TTCTGTTCCC
  ATGGGGAAAT TTTAAAATTG CTTGTTTTAA TCAAAAGCAC CCAGGATATT TGCATATTAA
  GTCATATCCT ATGCAGCTTG GAGAAGTTAG AAAAGGTTTG GGGTACTTGC TTGTTGAATA
  ATTGACACCA CATAGTCCAG GTAGCAAGGA AACACAGAAA ACACAAGCAG CCCATGGAGT
  R
  AGTACCAGGC TGGACCTGTT TGGGGCGCTT ACACTGTGTA AAGAATGAAA AGAAAACACA
  AAGAACAAAC TCACTCACCT CGGCCCCTGT GGTCTCACAC AGCCCTTGGG GACTGGAAAC
  TTCTGATGCG AGACAGAAGG CAGAGCCAGT AGCCGCACTT CCTCCTCCTT CTGAAGACCT
  GTCAAAAGAG CTGGCACCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51663314	NES14647426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36472939					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51663314	NES14647426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143352686 () rs orientation: forward

Symbol	Name	Function Class
D3Mit17	DNA segment, Chr 3, Massachusetts Institute of Technology 17	300 bp proximal
Gm33809	predicted gene, 33809	within coordinates
Gm38006	predicted gene, 38006	within coordinates
Rr398093	regulatory region 398093	16 bp upstream