rs36473467 SNP Detail

Summary

• ID
  rs36473467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35022925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAGGCA GACAAGACCC
  TAGAGCTTGA AGTCCTAAAC CTTCCAGGAG GAAGACACCT TACAAGTGTT CAGATCCATG
  CCACACTACG AACATGCCTG CCAGTCCTTT GTCTTTCCCC GGCACTGTCC CCGTTTCTGT
  CAAGGTCACG GATGTGTCTC AATGACTTTC AATGGCCATC GCACAGCCTG CTTCTAAAAC
  K
  TGCAGGTAGC CATCTGAAGA AGCCCTAGCT GCTGCCTTTC CCTACCCAGC TGGTGCAGTC
  TTCGACAAGG AGATGAACAG ACCACTTCCA TGAAAATGTG CATCTCCACC CTCTGGTTCT
  GTGACAATCG CTTGGGATCA AAGTAACTAT AGCTGAATTT TCCCATTCCC AGAGCTCCAG
  GACCCTTCCA GTCTATGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50670798	NES14013381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T		G	T	T	G		T
ss322899078	CHEV_9_34919214	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36473467					SNP	T	T	T	T	G	T	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670798	NES14013381	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35022925 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	75 bp proximal
Rr383192	regulatory region 383192	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates