rs36473707 SNP Detail

Summary

• ID
  rs36473707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54494693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCTTTT CGTTTCCTGG
  TGGAGCTGAC CTGCCCTCGA AGACAAATTT GCTCAAGGTC ATACAGGAGG TCATTGTCAT
  CTTTGAGAGA AACCCGAGGT ATTTTGATTT TCTGTCTCTC CGGTGGCCAA GGTCACTTAG
  CTAATTATGG ATATAGTACT GACCAGGCCG TAGGTCATCT GATGCCGTCG TGGGTGGCTC
  Y
  CTAGAAGTCT GCTATAAGCA ATGCAGATTT TTAAATGAAA TTTGTATTGC CCTTCTCCTT
  TAAAGAGAGG TTTGGAGATG CACTATTGTT TATTAATAAT TCAATTTAGG GGTTCTTAAT
  TTTAAATCCT GACAAAGCCA TTGGCCAATT GTGTATCCTC TGCAAACTAT TTAACATCTG
  CGAACCCACC TGTAAGATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52018425	NES15031924	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T	T
ss322965091	CHEV_9_54435216	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36473707					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018425	NES15031924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54494693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	264 bp distal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	within coordinates
Rr401372	regulatory region 401372	961 bp downstream
Rr679159	regulatory region 679159	888 bp distal
Rr679160	regulatory region 679160	13 bp distal
Tssr85161	transcription start site region 85161	897 bp downstream
Tssr85162	transcription start site region 85162	359 bp downstream