rs36474062 SNP Detail

Summary

• ID
  rs36474062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123155101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAAACC GACTTTAAAA
  AATGATGTTG GAGGAGGAGC CCTTTAAAGA GGTGAAAGTG AGTTGGCTTA TAATTATAGT
  ACTCAGGAGG CAGAGGCAGG AGGATTGCCC ATGACTTCAA GACCTGTCTG TTCTACACAG
  CTAGTCTGGT AAACAGGACT TGAACCTGGG TCAGCCAGTG TCTAGGTCTT ACTTAAGACA
  Y
  ACCACAGTGC TATGGGCAGT TTCCAGCCAG GGCCAGGTAG CTCCAAGCCA AAGGGAATGA
  GAAACAAAGC CACACAATGT TTCTTTGGAA GTTAAAGAGA AAGTTTTACA CTTTAGGGGA
  GGGGGTATCA CGTGTTTATG GCTTGTAAAT TGTAACTTCT TAGACCCCAG GAGAGGTGAG
  GGTCAGATAG GGGGTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51195022	NES13812733	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs36474062					SNP	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195022	NES13812733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123155101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	1138 bp distal
Orai1	ORAI calcium release-activated calcium modulator 1	within coordinates
Rr399336	regulatory region 399336	1954 bp downstream
Rr620047	regulatory region 620047	1954 bp distal
Rr620048	regulatory region 620048	1621 bp distal
Rr620049	regulatory region 620049	561 bp proximal
Tssr48743	transcription start site region 48743	1920 bp downstream
Tssr48744	transcription start site region 48744	1885 bp downstream
Tssr48745	transcription start site region 48745	1739 bp downstream
Tssr48746	transcription start site region 48746	1703 bp downstream
Tssr48747	transcription start site region 48747	798 bp downstream
Tssr53184	transcription start site region 53184	1128 bp upstream
Tssr53185	transcription start site region 53185	1081 bp upstream
Tssr53186	transcription start site region 53186	1058 bp upstream
Tssr53187	transcription start site region 53187	519 bp downstream
Tssr53188	transcription start site region 53188	1906 bp downstream
Tssr53189	transcription start site region 53189	1932 bp downstream