rs36474365 SNP Detail

Summary

• ID
  rs36474365
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140701192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGAAGT GGCACTGTGA
  ATGAGGCCCT GCTGTGAAGT GTGGCCCAGT CTCCTTGATA TTGGCGGTGC TGCCCTGTCT
  TTCTAGGCAG AGAACTTTGG CCGAGGCCCC ATGTGGCGCT GACTCTTCTT CCCTGTGGAC
  CATGGACCTT TCCACTCCTT CCTTATTTCT CCAGCTACAG ATCTTGGCAC CTTTCAAGGG
  M
  CAAAGTGCAT TGAGAGGCAT CTGTTGCTAA CTGAGACCCA GTGACCTCAC TGTGGATGGG
  ATGGACAAGA CCAACGAGGG CTCTAGGGGG CAGTGAAACT CCAAAGGCTA GGTGCCCTTG
  CCCTAGGACC TCCAGCCCTT CAGGAATGTG TCAATCATGT GACTAGATAA TACTCCATCC
  CTTTGACCAA GATGCCTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50482359	NES14107155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36474365					SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482359	NES14107155	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140701192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	1674 bp proximal
Gm33560	predicted gene, 33560	1952 bp upstream
Gm73077	predicted gene, 73077	872 bp downstream
Rr400707	regulatory region 400707	1751 bp upstream
Rr657849	regulatory region 657849	within coordinates
Rr657850	regulatory region 657850	76 bp proximal
Rr657851	regulatory region 657851	1551 bp proximal
Rr657852	regulatory region 657852	1711 bp proximal