rs36474498 SNP Detail

Summary

• ID
  rs36474498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91737118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAAAGT CAATGAGGTG
  GTGCCCTCTG AAACCCTGAC TTTCAGAGCA GGAGCTGGCT GGCCACTTCT AGTAGAGCTT
  GCTCTAAGCA GACAGTCATG GAAATGGTTT CCCCTCAGGT CTGACAGCTC CTTTGTTTTG
  GCTGGGTTTA CATGATTTCA GGTGTGAATT ATCCACTGTG TTGGGGTTGT CGATGCTCTC
  M
  GTTTCAGACT GTGGGGCATT TTGGACTTGA GGTTTTCATA TACAGCATGC TCCTTGAATC
  CACTGAGATG AGAGCTGCTG ACAGCAAGCT CCCAGACAAG AGGTTTGTTC CGGGGTAAAT
  AGACTTCCCA CCCAGTGAGT TTCTCTGGCT GGTTTCATAG ACAGTGTCAC ATTCCCACCG
  CCTTTCTGAC AGCCTGTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51366817	NES13739615	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36474498					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366817	NES13739615	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91737118 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1372 bp downstream
Rr141761	regulatory region 141761	1718 bp distal
Rr379752	regulatory region 379752	952 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1074 bp downstream
Tssr57759	transcription start site region 57759	1791 bp downstream
Tssr57760	transcription start site region 57760	1735 bp downstream
Tssr57761	transcription start site region 57761	1718 bp downstream
Tssr57762	transcription start site region 57762	1677 bp downstream
Tssr57763	transcription start site region 57763	1653 bp downstream
Tssr57764	transcription start site region 57764	1629 bp downstream
Tssr57765	transcription start site region 57765	1596 bp downstream
Tssr57766	transcription start site region 57766	1570 bp downstream
Tssr57767	transcription start site region 57767	1499 bp downstream
Tssr57768	transcription start site region 57768	1489 bp downstream
Tssr57769	transcription start site region 57769	1289 bp downstream
Tssr57770	transcription start site region 57770	1178 bp downstream
Tssr62095	transcription start site region 62095	1785 bp upstream
Tssr62096	transcription start site region 62096	1503 bp upstream
Tssr62097	transcription start site region 62097	1296 bp upstream