rs36475043 SNP Detail

Summary

• ID
  rs36475043
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101075096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCTCACC CCCCAAATTT
  GAAGTTTTTC TGGGTCAGAA TAACTATAAA ATTATGGCTC CTTGCTGGAA TTTGGATAGT
  TAGCATTTAT ATAGTCCCTT CTCCCTTTTT TTTTGTATTG TATTCCACGT TAGGCAACCT
  ATGTGGTGAG ATAGACACTG GCCCTAAGAT AGTAAGCAGT GTAGCAGAGA CTAGTCATCG
  M
  AGGCTGCAAT CAGTATCAGC TTGCTAGAGG ATGGCATTTA TTTAAAATTT AGAAGAAATT
  GTTATGCTTC ATTGTCTACA CATCCACAGT GTACTGCAGA CACACACAGT TGTTGCCATA
  TAAAAATGGA AACTGCTAAG ATGGTTCAGT GGATAAAGGC ATTTGCCACA CACTCCTGGT
  GACCAGAGTT TGATCCCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50785741	NES14211522	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	A	A		C	C	C	C		A
ss323148486	CHEV_9_101100227	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36475043					SNP	A	A	C	A	A	A	C	A	A	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785741	NES14211522	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101075096 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	1166 bp proximal
Tssr91107	transcription start site region 91107	1043 bp downstream
Tssr91108	transcription start site region 91108	1079 bp downstream
Tssr91109	transcription start site region 91109	1102 bp downstream
Tssr91110	transcription start site region 91110	1184 bp downstream