rs36475258 SNP Detail

Summary

• ID
  rs36475258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40990136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGGATT TAAAAAGGAG
  AAGGAAAAAA TAAAAAAAAT AGAGGGTGGG GGAGAAAAGA GGGGCTAGGT ATATGACTCA
  GTAGTGTGCA TGCGTGTCTA GCATGCACAA AGCCTTTGAA TTCACTTTCC AGTAAAACCA
  CCATTGTACC ACCTCAAATG AAAAACAGAT TAAGTTAAAG ACCATCAATT AATGCCAAAG
  Y
  CAGAATAACG TATCAACAAC AGCACAGCAT ATCAGAGTCT CATCCCAGAG GCTTCTGGCT
  GGCTGCAGAG CCAAAGTTTA CAGAGCTGAG AGCTGATGGC TGGTATCTTA AATCCCAAAA
  CCAAGCCTAG CACTAAGCAT CCTGATAAGT AACTAACCTA AGTGGAGGAC TCACTCTCAG
  ACTGCTTAAC GTTCAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50828936	NES13537303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36475258					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828936	NES13537303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40990136 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547536	regulatory region 547536	1666 bp distal
Rr547537	regulatory region 547537	1884 bp distal
Tssr159239	transcription start site region 159239	1206 bp upstream