rs36475896 SNP Detail

Summary

• ID
  rs36475896
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58010009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCGACT CTTTCCATCT
  CTTGAAAAGT TCCAGTCCAA ACGCCCTGCA TGCAACTAAC TCCATGCCAC GCCTGCTCCC
  ACTATGGTGC ACCTGCTTTC TCTACTCAGA ATAGATCGCT CCAAAATATT TTCATAATAT
  GCTTTCTCAC TCAACGGTCA CCTCAGTGAT GCCACCCTAA GGAGGATTTA CCATTCCAAT
  S
  TCACACAACC TCACCCCTGT CCCTTAGCAT CTGCTTCTGA CAGACAGGCT GTGTACCTCT
  TTAGCTTATC CATTCCCAGG AACCCCCATG AGATGGATTT AGCTATATCC TAAGGAAGGG
  GTGGGGGTGG GGGTGCGGGG GTGTGGGTGG GTGAGGAGGA GTTGGGGGGG CTCATAGCAG
  GTGTTTTGAC ATTTGTTAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50405913	NES13432239	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36475896					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50405913	NES13432239	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58010009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	790 bp proximal
Rr393751	regulatory region 393751	511 bp upstream
Rr538413	regulatory region 538413	1251 bp proximal
Rr538414	regulatory region 538414	1885 bp proximal
Slc12a2	solute carrier family 12, member 2	1741 bp upstream
Tssr5332	transcription start site region 5332	1354 bp upstream
Tssr151207	transcription start site region 151207	1659 bp upstream
Tssr151208	transcription start site region 151208	1683 bp upstream