rs36477822 SNP Detail

Summary

• ID
  rs36477822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33704067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTAAAC CTATCAGCAG
  CAGAGCTGGG ATTGATAGGT GAACATCTCC CTCCTCACTT TTTAGAGAGC AGCTTCAGTC
  TTCACCAGCT GCCCTGAGGC CTCTGTTGTA GTGCCTTCCC CAACAGCATT GAGACGGTGC
  ATCAACACGG CATGTTGCCT CCCCTCCCAT CTCCATGGAC AGAGCATCCC TCCTTCACTG
  Y
  CCAATAACTA AAACCTCCAA CTCATTGGCT GCTGCCTCTG GTGGCCTTGG AGGGAAAATG
  ACTGTGGAAG GCATCCTAGT GTCAATCTCT GGCTACTGGA CAATCCAACA AGGGTGAGCA
  CACCTGCACA CGTACATCCA TCACTCACAC AAATAAAAAA CAAGGATGTG TGTCACGGAT
  AACAGTGAGT CTATATGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50934449	NES13474722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36477822					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50934449	NES13474722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33704067 () rs orientation: forward

Symbol	Name	Function Class
Prim2	DNA primase, p58 subunit	within coordinates
Rr15702	regulatory region 15702	1067 bp distal
Rr15703	regulatory region 15703	within coordinates
Rr36335	regulatory region 36335	1511 bp distal
Rr395983	regulatory region 395983	1640 bp downstream