rs36478257 SNP Detail

Summary

• ID
  rs36478257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22198113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGATCT GGTGGAACTG
  ATTTAGTATA TAGCTCCTTT AAAATTGGCC CCATTTGGAA TTGGTCCATT TATCATCTTG
  GAAATCATGT ACTAGGGCCA CTTGGAATTC TGTGACGTTT TCCCTAGGAA TTCATTTAAT
  AAAATCTTTT TCACCTTTTA TTTATAGAGC TGGGGTGAAC TGCAGCTATG TCTATCTTAA
  Y
  GAACACAATT AGCTCTAGTA AGATTTTAAT TTTTCCTCAG GTCTAAATGT GACTTCCAGA
  ATTTCCACAG AGAATAGAAA CTCATGGCAG TCTTGTTACA CTGTTGCACA GGCTACTGAA
  CTAAGGCCTG TAGACTAGAT GGTTGTTGGG TTTGCACTTT TCCTGGGGCA GGAGCCACAT
  TTTTGAATCA GTGGGCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51433234	NES14434303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		T
ss320684111	CHEV_3_22042871	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36478257					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51433234	NES14434303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22198113 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574213	regulatory region 574213			236 bp distal
Rr574214	regulatory region 574214			483 bp distal
Rr574215	regulatory region 574215			382 bp proximal
Rr574216	regulatory region 574216			495 bp proximal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				Noncoding-Transcript-Variant