rs36478427 SNP Detail

Summary

• ID
  rs36478427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGTGGC TTTTGAGCAT
  GGTGCCTGGT TCTGACCCTT TCCTCCCTGA ACCTTACAGA TTTGCTCCTA TTCATGCTGA
  GGCTCCTGAG TTCATAGAGA TGAGTGTTGA GCAGGAGATT CTGGTGACTG GGATAAAGGT
  TGTGGATCTG CTGGCCCCAT ACGCCAAGGG TGGGAAAATC GGTACGTTGG TTTTTGGTCC
  K
  TGTTTTCCAA ATACAGTAAA GCATGGAGAC CCTTTTTTCT TTTGAGAGTG CTTGAGCCTT
  CAGTGATGAT TAGCTTCTGA CTTTCGTTCT TCTGAATTTG CTGAAGCCAG ATGCCGTTCC
  TGAGAAGGGG AAAATGGACA GAACTGAACA TTTTTGAAGG CTGTTTAATT TGGGAATGCA
  GAGATCTGAA ATATTTCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50944575	NES14144914	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		T	G	G	T		G
ss323531638	CHEV_10_127522288	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36478427					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944575	NES14144914	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921101 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1085 bp distal
Gm55458	predicted gene, 55458	57 bp upstream
Mir677	microRNA 677	54 bp upstream
Rr402340	regulatory region 402340	1920 bp downstream
Rr441097	regulatory region 441097	1949 bp distal
Rr441098	regulatory region 441098	1237 bp proximal
Rr441099	regulatory region 441099	1337 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1016 bp downstream
Tssr96319	transcription start site region 96319	1923 bp downstream
Tssr96320	transcription start site region 96320	1294 bp downstream
Tssr96321	transcription start site region 96321	1247 bp downstream
Tssr96322	transcription start site region 96322	278 bp upstream
Tssr96323	transcription start site region 96323	799 bp upstream
Tssr96324	transcription start site region 96324	900 bp upstream
Tssr96325	transcription start site region 96325	1060 bp upstream
Tssr96326	transcription start site region 96326	1077 bp upstream
Tssr96327	transcription start site region 96327	1093 bp upstream
Tssr96328	transcription start site region 96328	1140 bp upstream