rs36478538 SNP Detail

Summary

• ID
  rs36478538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97597480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATAGGCAT GATGTGGCCA CCAGTAGCCC CCAATTCCCC
  TAAGGGAAGT TAGGATTACA GGGGACAGCA GAGTTAAGGA AGTCGGTTCA ACTTGAGATC
  R
  TGTAAGAAAG GTGCTAGGCT AAGTGCGGGG CACCTAGAAG TTACCACATT CCGTTCACTG
  TGTAGACTCA AAGACCTCTG GTGTGGTGGT AGAGACCAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss50996644	NES13919752	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs36478538					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996644	NES13919752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97597480 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	629 bp upstream
Mir7225	microRNA 7225	345 bp downstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Tssr30803	transcription start site region 30803	665 bp upstream