rs36478746 SNP Detail

Summary

• ID
  rs36478746
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTCATCT TGCTGGGGAA TGGGTTGGGT CACACCGTTT
  ACTGTGGCCT CAGACCTCTG AACAGAAATA TGGACTAGTC CTGCCAAGTA TATCAGTGTG
  S
  TAGAGGCAGG TGAACCCTGA GAGGTGGGAT GTAGAAGTGA TCTGCTTTAG GAAGACATTC
  TGTGTTGGAC TGAGCTTGCT GGGGTACAAG TTTAACACTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677577	NES14010808	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36478746					SNP	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677577	NES14010808	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	699 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1641 bp distal
Rr676840	regulatory region 676840	812 bp distal
Rr676841	regulatory region 676841	1210 bp distal
Rr676842	regulatory region 676842	1615 bp proximal
Rr676843	regulatory region 676843	1986 bp proximal
Tssr84449	transcription start site region 84449	1745 bp downstream
Tssr84450	transcription start site region 84450	1156 bp downstream
Tssr84451	transcription start site region 84451	589 bp upstream
Tssr84452	transcription start site region 84452	617 bp upstream
Tssr84453	transcription start site region 84453	1358 bp upstream
Tssr88934	transcription start site region 88934	1682 bp upstream
Tssr88935	transcription start site region 88935	1631 bp upstream
Tssr88936	transcription start site region 88936	1610 bp upstream
Tssr88937	transcription start site region 88937	1546 bp upstream
Tssr88938	transcription start site region 88938	1289 bp upstream
Tssr88939	transcription start site region 88939	1254 bp upstream
Tssr88940	transcription start site region 88940	1222 bp upstream
Tssr88941	transcription start site region 88941	933 bp upstream
Tssr88942	transcription start site region 88942	918 bp upstream
Tssr88943	transcription start site region 88943	890 bp upstream
Tssr88944	transcription start site region 88944	842 bp upstream
Tssr88945	transcription start site region 88945	825 bp upstream
Tssr88946	transcription start site region 88946	729 bp upstream
Tssr88947	transcription start site region 88947	700 bp upstream
Tssr88948	transcription start site region 88948	670 bp upstream
Tssr88949	transcription start site region 88949	406 bp downstream