rs36479394 SNP Detail

Summary

• ID
  rs36479394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123601423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATACA AAGTAAAAAA
  ATGACTCATT TTAATACTTT TAGAATAGTC TTATATTTAA ATTCTTGATA TATTTGTTTT
  CTTTTGTGTT GGGGAAAAGT TAGAAATAAA TGATTTTTGT ATGTGTATTA TGAATTATCT
  GTTAAATAAT GTATCCTCCA ATACTTTATT GAAAGTTATC ACATTAAATT TCTGTGTATG
  Y
  TATATCTAAT TATGGAATTT TTGTTTTGCA TAAACATATT CTTCAAGGCA TAAAAAGATA
  ATGACTAAGA TCCCAGAGTG ACTTTTTCTC TTTAGACACA CTAATTAGAA CAGCTTTTAC
  ACTACAAACT CCCTTCACAG CAGCTAAGGG AGTGAGGGGT GAGGTCTTGG CACTTGGCTT
  TTTAATAGTA AGAGAAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51028516	NES13904382	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	T	T	T		T	T	T		T
ss135773728	ENSMUSSNP1661874	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss320923140	CHEV_3_123510692	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36479394					SNP	T	T	C	T	C	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028516	NES13904382	PERLEGEN	MM_PANEL	f	SNP	C/T