rs36479471 SNP Detail

Summary

• ID
  rs36479471
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128178859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTTTTGA ACCTCGATAT TGTTTATCTG GATATGTTTA
  AATATATGCT ATATAATGTA GTTGGTATGG AAGAATTATT TCAAAGAGAG AGTAAGTCAG
  K
  TCTATCTTTT TGAACGTGCA AAGAAACCTA ATAACCTATT TCACTTTCGC CTTATTCTTT
  TTTTTTTTGG GGGGTGCAGC GAACTTTATT GATGGTATTC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863559	NES14892161	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36479471					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863559	NES14892161	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128178859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	777 bp distal
Gm4691	predicted gene 4691	254 bp downstream
Gm10010	predicted gene 10010	1206 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	283 bp downstream
Rr399953	regulatory region 399953	1088 bp downstream
Rr639207	regulatory region 639207	1582 bp distal
Rr639208	regulatory region 639208	1325 bp distal
Rr639209	regulatory region 639209	1178 bp distal
Rr639210	regulatory region 639210	135 bp distal
Rr639211	regulatory region 639211	379 bp distal
Tssr63410	transcription start site region 63410	1326 bp upstream
Tssr63411	transcription start site region 63411	1321 bp upstream
Tssr63412	transcription start site region 63412	1304 bp upstream
Tssr63413	transcription start site region 63413	1261 bp upstream
Tssr63414	transcription start site region 63414	1246 bp upstream