rs36480897 SNP Detail

Summary

• ID
  rs36480897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50906142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTCTGTG TTCATTTAAA
  TAACTCTGGA CGTCAATCTG AGAAGTGGCC AGTCACCCTG AAGCTGAAAT CACTCTGGAC
  CACTCACTGC CTTTAGCTTA AAACAAAAAG CCTCATTTTG TAACTTTGTA AAATGATCTT
  ATAAAAACAA ACTAATCTTA ATCTATCTCA AAGGAACATT GGAAGGATGA CTAAACACTG
  Y
  CTTCAAAGCT GCTTTTAAAC AGTGCTATGG AAATAGAATA CAATGGCACG ACTGTCATAT
  TGTTACTTCT TTTTATACCA CTTAAAGGCT AGCATTACAC CAAAAATAAA ATCAGAAAAG
  TAGATTTCCT CGAAGCAGCC ATTTTGGGGA CACAAAACTT ATCTATGCTA AATGAGCCAT
  TCCTTTCTAG GTTCCGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51525422	NES14693978	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs36480897					SNP	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51525422	NES14693978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50906142 () rs orientation: forward

Symbol	Name	Function Class
Rr72151	regulatory region 72151	1459 bp proximal