rs36481378 SNP Detail

Summary

• ID
  rs36481378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149148955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGCTGA CAGAGTATCT
  GTGGTTTCCT TTGTTCTGAA AGGGCACCCT TTAGTTCACA GTAGTCTGAA GTTCGCCCAG
  CCAGGCTATC CTGTACACTC TCTATCTGTC TGAGTCTCCC TGTGGGGTTT GGGGCAATGA
  GTGGGACTCC CATCCAAATC CCTTTGGCTG TAGGAGAGTC TCCCTTGACC ATAATCCTTT
  Y
  CCCCCTGTAG TACTGAGGCT CATATGAAAA ACTACAATGA CAATGACTGC GCAGGACATA
  TTCAAGAGCA GCCCCATGGC TCCCACAGAT ACTTTCAATC AGCCTTTCCT GGCAAGCCTC
  AGCTTACTGT ACAGCTCAGT AAAAGAGTTT GAAAAGAAAC TCTAATTGCT AGGTAAGCCA
  TAAGTCAAAT TCCTCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052148	NES13892895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36481378					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052148	NES13892895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149148955 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	36 bp upstream
Gm30382	predicted gene, 30382	within coordinates
Rr587324	regulatory region 587324	1465 bp proximal
Rr587325	regulatory region 587325	1864 bp proximal
Tssr36100	transcription start site region 36100	1868 bp downstream
Tssr36101	transcription start site region 36101	1935 bp downstream
Tssr36102	transcription start site region 36102	1949 bp downstream