rs36481716 SNP Detail

Summary

• ID
  rs36481716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63286745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGAGCA AATATAATCA
  CATTTCAACT TTTTGTAGCC TTTACATAGC ATGAAATCTT AAGACTTTAT TATTTGAGCA
  GAGTTTCACA GAACTATTAA CATTCAAAAG TACCTCTTTG TTAAGTAATA TAAACACCAC
  CGTCCAAATT AAAGGGATAT ATGTTTATGA TCTTAAAGTT TTTGCACATA GTATTTTCTT
  Y
  TTAACAGTAG ACATAAGTAG CCACACAAGT TCTGACTGAG GTAGTTTGGT AGCCATAAAG
  TACTTTAATT GTAGTAGAAG GTTTATGCTT GTTTCTTTCC TACTTAAAGG GGGTTAAAGT
  TTGGATTGGA AATGTCCCCC ATATGCTCAA GCCTTGCTTG TCCGTCAGTG GCACTGCCAG
  GAGACGATAG AATCTAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52026087	NES15043507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36481716					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52026087	NES15043507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63286745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	1324 bp distal
Map2k5	mitogen-activated protein kinase kinase 5	1561 bp upstream
Rr401444	regulatory region 401444	1418 bp downstream
Rr680973	regulatory region 680973	1071 bp distal
Tssr90089	transcription start site region 90089	1697 bp upstream
Tssr90090	transcription start site region 90090	1634 bp upstream
Tssr90091	transcription start site region 90091	1549 bp upstream
Tssr90092	transcription start site region 90092	1483 bp upstream