rs36482227 SNP Detail

Summary

• ID
  rs36482227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3403195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATTTCA ACTTTCCTGT
  TTCTATCCTA GTGGGCGAAT CAAATGAAGC ACAGATGGGG CTAGTCTTTT GATACAGAGA
  CTTAATTATG CAAGATGCAA TAAATACAAC AGAGGTCACT GTTTTTTCTT TATGAGAGAT
  AACCACACAA CCAAGGCATC TTTCTTCTGG GTGATGAGGA CTCTTCCTGC ACCCAGGCTT
  R
  TGCAACACCA AGTCTTGACC TCCAAATAAT TAAGAATTAT TTATTTATTT ATTTATTTAT
  TTATTTAATG AGTGTTATGT CATCATGTAG TTGCAATGCC TGTGGAGGCC AGAAGAGGGA
  GATCTCCTGG AAATGGAGCT AGAGATGGTT TTGATGATCC CTGTGAGTTC CTGGATGTGG
  CCTTAGGTCC TTTGCAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50638825	NES14033326	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36482227					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50638825	NES14033326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3403195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21331	CpG island 21331	678 bp proximal
Cwf19l2	CWF19 like cell cycle control factor 2	397 bp upstream
Rr401237	regulatory region 401237	172 bp upstream
Rr673633	regulatory region 673633	78 bp distal
Rr673634	regulatory region 673634	within coordinates
Rr673635	regulatory region 673635	105 bp proximal
Rr673636	regulatory region 673636	340 bp proximal
Rr673637	regulatory region 673637	408 bp proximal
Tssr83616	transcription start site region 83616	844 bp upstream
Tssr83617	transcription start site region 83617	863 bp upstream