rs36482242 SNP Detail

Summary

• ID
  rs36482242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGCTTG GGGAAGAAGT
  TGCCCAGTAT GACGGTGCAT ACAAGGTTAG CAGAGGCCTG TGGAAGAAAT ACGGTGACAA
  GAGGATCATC GACACCCCCA TCTCAGAGAT GGGCTTTGCT GGAATTGCTG TTGGTGCAGC
  CTGTGGCTGG GTTGCGGCCC ATCTGTGAAT TTATGACCTT CAATTTCTCT ATGCAAGCTA
  Y
  TGACCAGGTT ATAAACTCAG CTGCCAAGAC TTACTATATG TCCGCTGGCC TTCACCCTGT
  GCCCATAGTA TTCAGGGGGC CCAATGGCGC CTCAGCAGGT GTAGCTGCTC AGCACTCGCA
  ATGCTTTGCT GCATGGTATG GGCACTGCCC AGGTTTAAAA GTGGTCAGCC CCTGGAATTC
  CGAGGATGCA AAAGGACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50908906	NES13484769	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36482242					SNP	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908906	NES13484769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841701 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1731 bp downstream
Rr407423	regulatory region 407423	1148 bp distal
Rr407424	regulatory region 407424	1402 bp distal
Tssr5799	transcription start site region 5799	356 bp downstream