rs36482745 SNP Detail

Summary

• ID
  rs36482745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52154064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAGAGT GTATTGGGAA
  GAAAAATATT GTGTGCACAC AGCAAGTTTG AAATATAACA TGTACCTTGT GTTTTCACAA
  GCTGCAAGAT ACAGGGCTCC TATAGAATTG CTATGAGCTG AGAAGAAAAC CAACACCAAG
  GTAAGGTATT ATACAAAATC GAAAACCAAA GAATTAAAAA AAACTGTGTA TTTCCAATGC
  R
  TTCAACCATA TTCCAGGTAA ACAAAAAGGG TGTATATCCA ATGAAGTGAC ATTCTGGGGC
  TGTATGGTGC CAGTTTCAAG ACTTACAACT GGCCAGGGAG GGTGAGAAGG CAGTGGCAGG
  CATTCTTAGA AATTCCAGTA GATAGACATT TTGATTATAG CAATATTACT AACAAGAAGG
  TATAGCTAAA TTAGAACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ
ss50950851	NES13933436	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ
rs36482745					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950851	NES13933436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52154064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi240	CpG island 240	888 bp distal
Gm28177	predicted gene 28177	within coordinates
Gm31812	predicted gene, 31812	1006 bp upstream
Rr366897	regulatory region 366897	307 bp downstream
Rr410805	regulatory region 410805	1165 bp distal
Rr410806	regulatory region 410806	547 bp distal