rs36482900 SNP Detail

Summary

• ID
  rs36482900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12826386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATTCAC GGACATGCCG
  GAGGAGTTCA ACATGGGCAC ACACGACTGT CACAGACGGC AGATTCTGGT AAGCTCCGTA
  AAAGAAGTGA GTCTACACTA AGCAGTAGCA ATCTAGGAGT GAGCTTGCGT TCCCAAGGGA
  AGTCAGTTCT TCACAAGAGG TTAGTGGATC GGTAGGAATT CACTGGCCAA GTAAGGGAGA
  R
  CAGAAGCAAA GACGTTTCCT GTTAGTGCTT GCTATGCTAA CTGACCTGGA AAGTATGGGC
  TAAGAGGGGC TTTGGAGAAA GAAATCAGGT GATAAGCCTG GGAAAGTTGG GTTCAGGTTC
  TGTAGGGCCT CCAATGCCAA GCGTGGTGTT TGTACTCAAT ACTGTGAGTA GCCTGTGGTA
  CCAGCAGTAG CTCTTTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51593116	NES14609201	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36482900					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593116	NES14609201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12826386 () rs orientation: forward

Symbol	Name	Function Class
6030458C11Rik	RIKEN cDNA 6030458C11 gene	1651 bp upstream
Cpgi6961	CpG island 6961	944 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	316 bp proximal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	within coordinates
Rr369910	regulatory region 369910	1395 bp downstream
Rr369911	regulatory region 369911	1159 bp downstream
Tssr130744	transcription start site region 130744	1467 bp downstream
Tssr130745	transcription start site region 130745	1417 bp downstream
Tssr130746	transcription start site region 130746	1393 bp downstream
Tssr133797	transcription start site region 133797	1696 bp upstream
Tssr133798	transcription start site region 133798	1646 bp upstream
Tssr133799	transcription start site region 133799	1625 bp upstream