rs36485178 SNP Detail

Summary

• ID
  rs36485178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162162616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACTGAGG CTGTTAGCAC
  Y
  CTAGTTCTCC TCACTACCCT TAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss51399138	NES14460664	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	C	C
ss145934719	ENSMUSSNP3790661	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs36485178					SNP	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51399138	NES14460664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162162616 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnm3	dynamin 3			Intron
				Noncoding-Transcript-Variant
Rr421955	regulatory region 421955			52 bp distal
Rr421956	regulatory region 421956			1328 bp proximal
Rr421957	regulatory region 421957			1524 bp proximal
Rr421958	regulatory region 421958			1768 bp proximal