rs36485559 SNP Detail

Summary

• ID
  rs36485559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40286730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTCCTC AGTGGATCAA
  AGGAGAAGAG GGAACAGTAA GGGTTTTATT TTTAAAGTAG AAGGTAAAAA TACTCTGCCT
  ACGGCTGCAG CTAGAACACA ACTATCCCCA CACACTGCAA AGCAGAAGTT CTTCTCAGGC
  CCCAATATTA ATCGCAGCAA GAGTCAAACA CTTGCAAAGC TCCAAGGCAC ATGTCCACTC
  Y
  TCCTTAGCTG GGCATCCTAG AAGATGGGGC CCAGTCCCTA TCACTCTCTC CTCGGGGAGA
  GGCCTCCCCG AGAGGTCAGA GGCTGCCTCA GCTGTGGCTA GCCCCCAGTG ATGACAAGGA
  AAATGCTCCC CGGGAGACAG TCAAGGCCCC CAGCCCAGAA CAAGGGCAAG ACTAAGGAAA
  GCATCTTTGT ATAAAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677882	NES13999650	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36485559					SNP	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677882	NES13999650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40286730 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	517 bp proximal
Rr676806	regulatory region 676806	823 bp proximal
Rr676807	regulatory region 676807	874 bp proximal
Rr676808	regulatory region 676808	977 bp proximal
Tssr88904	transcription start site region 88904	687 bp downstream
Tssr88905	transcription start site region 88905	779 bp downstream
Tssr88906	transcription start site region 88906	898 bp downstream
Tssr88907	transcription start site region 88907	925 bp downstream
Tssr88908	transcription start site region 88908	992 bp downstream
Tssr88909	transcription start site region 88909	1396 bp downstream