rs36485704 SNP Detail

Summary

• ID
  rs36485704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109679930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACTTCA GGATCATGCC
  ATGGAGGTCT GCTGTACTGG GGCATGTGAT GGGATGGCTG TCAGATATAT ATCAACTAAT
  GGCTTGCTTG AGCACTTTGA CTAACATCCA GTGTGCAACC CTGCATTCAA CAGGCCTGCC
  AGGTCTGAAG GTCACGTTGG GGAATTACCG AGGTAGTCTT GTCAGTGTTC GCTTCTGGTA
  Y
  CGGAAGAGAG GTTTTCTGGG TCTCTGTTTC TTTGATGAGA ATGAAACACA CCCAGCTAAC
  CTTTTTTTCA GTATCAAATC CCATCTTGGA GGCTTCGTGG TCCAGATCCC AGTCTCAGGG
  AAGGATGGTC CTGTCAGCAT CCAGCCAGGG GACAGGAATA ACTGGTTCTC CACAAAGCCA
  GCGAGTGGAT TATCGTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51053011	NES14374828	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36485704					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053011	NES14374828	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109679930 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	1606 bp upstream
Mir323	microRNA 323	903 bp downstream
Mir329	microRNA 329	within coordinates
Mir380	microRNA 380	1633 bp downstream
Mir494	microRNA 494	1822 bp upstream
Mir758	microRNA 758	606 bp downstream
Mir1197	microRNA 1197	1060 bp downstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	606 bp distal
Rr262534	regulatory region 262534	775 bp distal