rs36485962 SNP Detail

Summary

• ID
  rs36485962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35123743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCTCTCT ATAAATTCAC
  TTGAAGATAT AGTTTTGACT TGCTACATAA GCAACTAAAA CTAATTTATG CTAGACCAGC
  TTGTCCATTC TATGTAACTA AATACATTGG AAGTACATTT GAAAAGAAAC TAAGTTAGAT
  TGATGTTAAG GGAGGAGAAA CCTATTCCAT TGTTTAGAGA GAAGTGTATA TGTAGCCTAA
  W
  GCAGGTAGAG GTCCACGGTT GCTGGATGCA TTTTTCAGAG AGGGTGTGTG TGTGCAGTGT
  TTGTGGAAAA GGAGTGGGTC TTCCAAGTGC ATGATTAGAA GAAGGGGGTT GGGTTGGAGA
  TGACTCAGTG GCTAAGAGCT GGAAATGCTC TTGCTGAGGA CTCTGCTTTA GTTCCCAGCA
  CACACATGTT ATAATCATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51085197	NES14364973	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36485962					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51085197	NES14364973	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35123743 () rs orientation: forward

Symbol	Name	Function Class
Gm8245	predicted gene 8245	883 bp upstream
Tex56	testis expressed 56	within coordinates