rs36486323 SNP Detail

Summary

• ID
  rs36486323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24214855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTGTTG TTCACTATTT
  AAAGTAAACA GCCAGCCTGG CCAGAAGACT TGCCACTTGG GACCTTAGTT TCCTCTCATC
  TTTTATCTTT TATTCAGCGG CCCGTTCACC TGCTTTCTTA TTTTAGTTGT AAAGAATTCT
  TCAAAGTGGC TTGAGAAGGG GCAAGCACGA AGGCGAGTTC TCTCAAACCC TTTGAAGGAT
  W
  TCTGGAACAC CTACGTGTAC AGGAAAATTG CCTTTCTTCT TTCTTACAGA TCACAAAACG
  CAGAGCTTGT CTAGAAAGAA ATTCCTTTTG GAAAATGCCT TTCTCTCTGC AGATCTAAGG
  CTGGCTAGTT TCCCATAATT TCAGGCCATT AGGAAGCTCC CCAGAGGCAG GTTTTTCATT
  TTACATAAAC TTCAACTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50928141	NES13475693	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36486323					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928141	NES13475693	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24214855 () rs orientation: forward

Symbol	Name	Function Class
Col9a1	collagen, type IX, alpha 1	1836 bp upstream
Rr408587	regulatory region 408587	454 bp distal
Tssr21	transcription start site region 21	1879 bp upstream
Tssr6103	transcription start site region 6103	1915 bp upstream