rs36486454 SNP Detail

Summary

• ID
  rs36486454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136805293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCG ATTGGATAAC TATAGGCCAA
  R
  AGACCCGCCT CATTCCAGAG TATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51454425	NES13991556	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	A
ss133848565	ENSMUSSNP5197549	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss321998857	CHEV_6_136776816	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs36486454					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454425	NES13991556	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136805293 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	within coordinates
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	73 bp distal
Rr640073	regulatory region 640073	within coordinates
Rr640074	regulatory region 640074	559 bp proximal
Smco3	single-pass membrane protein with coiled-coil domains 3	1636 bp downstream
Tssr2044	transcription start site region 2044	162 bp upstream
Tssr59337	transcription start site region 59337	535 bp downstream
Tssr59338	transcription start site region 59338	497 bp downstream
Tssr59339	transcription start site region 59339	484 bp downstream
Tssr59340	transcription start site region 59340	456 bp downstream
Tssr59341	transcription start site region 59341	119 bp upstream
Tssr59342	transcription start site region 59342	517 bp upstream
Tssr63836	transcription start site region 63836	551 bp upstream
Tssr63837	transcription start site region 63837	534 bp upstream
Tssr63838	transcription start site region 63838	526 bp upstream
Tssr63839	transcription start site region 63839	470 bp upstream
Tssr63840	transcription start site region 63840	233 bp upstream
Tssr63841	transcription start site region 63841	116 bp upstream
Tssr63842	transcription start site region 63842	98 bp upstream
Wbp11	WW domain binding protein 11	79 bp upstream