rs36486472 SNP Detail

Summary

• ID
  rs36486472
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4877379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGATACA CAGACAAATC CTGTCTCAAG AAACAACAAA
  CAAACAAACA AACAGAAATT TGGCTTCAAT TTCATCTTGT CTCTAGGCAC AGCTGACACA
  S
  CTGGCACCTG TTTTGTTGTT GTTGATTTGT TTTATTTTGT TGTGTGTTTT GTCACAATGC
  CCTATGCTAA AGACTTAAAT GGTGGAGAGC CAAAGGTGGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss50582090	NES13646543	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36486472					SNP	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50582090	NES13646543	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4877379 () rs orientation: forward

Symbol	Name	Function Class
Ccs	copper chaperone for superoxide dismutase	within coordinates
Gm59022	predicted gene, 59022	within coordinates
Rr542851	regulatory region 542851	1217 bp proximal
Tssr157516	transcription start site region 157516	1285 bp downstream