rs36486964 SNP Detail

Summary

• ID
  rs36486964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8500288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAAGTG CTGGGATTAA
  AGGTGTGTGC CACCACTGCC CGGCCTAAAT AAGATTTGAA CTTAAAAAAA TGAACCTGGA
  GATGCAACTC AGTCAGTTGA TGGAGAACTT AGCATGCACT GAGCTCTGGG CTTGTCAGCA
  CTGCATAAAC TGGACATGGG GTGCAGGCCA AGGCACAATG GTAGTGAGCC TGGAGATGCG
  Y
  ACCTTCTCTC AACTTCCTCC CTGCTACAGA AAGCATCAGA GGAAACATAA ATATCCTGAC
  TTCAGAGCCA CGCTGAGGTT AGGTCCCTTG CCTTTGGTCA GAAACCTACC TGGTCTCTAA
  TACATACTTA CTGAGCGACC TCATGCAAGG TATTCAACCT TTCTGAGCCT CCCTACCTGT
  ACTATTCGGC TCCCGCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51776442	NES14543191	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36486964					SNP	T	C	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776442	NES14543191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8500288 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	within coordinates
Litafd	LITAF domain containing	within coordinates
Rr322148	regulatory region 322148	1488 bp distal
Rr322149	regulatory region 322149	288 bp distal
Rr322150	regulatory region 322150	113 bp proximal
Tssr137001	transcription start site region 137001	1634 bp downstream
Tssr137002	transcription start site region 137002	1630 bp downstream
Tssr137003	transcription start site region 137003	1607 bp downstream
Tssr137004	transcription start site region 137004	447 bp upstream
Tssr139871	transcription start site region 139871	319 bp downstream