rs36487120 SNP Detail

Summary

• ID
  rs36487120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91733248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTTGTGAAA GTTACCACCC CAGAACCATC CAGCAGCTCC CAGCAAGGAG
  Y
  GCTCCAAGTG GCTGTAGACC CTGGATCTTA AAGGATCTGA GTTCCAGTAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51366833	NES13739716	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36487120					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366833	NES13739716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91733248 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	147 bp upstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	850 bp upstream
Tssr57746	transcription start site region 57746	1287 bp downstream
Tssr57747	transcription start site region 57747	1093 bp downstream
Tssr57748	transcription start site region 57748	250 bp downstream
Tssr57749	transcription start site region 57749	110 bp downstream
Tssr57750	transcription start site region 57750	226 bp upstream
Tssr57751	transcription start site region 57751	327 bp upstream
Tssr57752	transcription start site region 57752	716 bp upstream
Tssr57753	transcription start site region 57753	1552 bp upstream
Tssr57754	transcription start site region 57754	1651 bp upstream
Tssr57755	transcription start site region 57755	1742 bp upstream
Tssr57756	transcription start site region 57756	1775 bp upstream
Tssr57757	transcription start site region 57757	1812 bp upstream
Tssr57758	transcription start site region 57758	1843 bp upstream
Tssr62094	transcription start site region 62094	1030 bp upstream