rs36487719 SNP Detail

Summary

• ID
  rs36487719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124715510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCGAGGCA GGGTTTCTCT
  GTGTAGTCCT GGCTGTCCTG GAACTCACTT TGTCAACCAG GCTGGCCTCG AACTCAGAAA
  TCCACCTGCC TCTGCCTCCC GAGTGCTGGG ACTAAAGGCA TGCGCCACCA CGCCGGGCGC
  ATCCACTCTT TCAAAGAACA CTGGCTGCTT CTCTGTGCCA GCCACTGCAC GAGAGAGGGC
  Y
  CTGCTCTCAC GGAGCAATAA ATCAGCACAG AAAGAGACTG ACACCTTACA AACTGGAACA
  ATGACGGGAA AAGGCAGGAT GACACATAAG GTGAAGCGCC TTTGCGAGGC TGGCCTCTTG
  CATTACAGAA ACCAAGACTT GATGAAGGAC TCAGACATGT GAAGACCAGT GAGGACAGCT
  CCTGTGTAGA TGTCAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51196612	NES13821395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36487719					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196612	NES13821395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124715510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	1237 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	1701 bp upstream
Rr399368	regulatory region 399368	1529 bp upstream
Rr620506	regulatory region 620506	1206 bp proximal
Rr620507	regulatory region 620507	1674 bp proximal
Rr620508	regulatory region 620508	1704 bp proximal
Tssr48907	transcription start site region 48907	1668 bp upstream
Tssr48908	transcription start site region 48908	1687 bp upstream
Tssr53375	transcription start site region 53375	1576 bp downstream
Tssr53376	transcription start site region 53376	1598 bp downstream
Tssr53377	transcription start site region 53377	1636 bp downstream