rs36488579 SNP Detail

Summary

• ID
  rs36488579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24525680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGAAGA CGAAAGAGGA
  CAAACTGGAG ACTGCTGCAG AAAAATGCAG CACAATTCAC TACTAGGATA AATATGAAAG
  TAGAAGGTTT TGATATCAAT AACAACATCC AAATTCAGAG CTGGGGACAG AACAATTCAT
  ATACCATCAA GAGACATTCA ACCCATAGAG GAAGAATATC TAGAAATAGA AGTGTGAGTT
  Y
  TGTTGTCCAC AAGTCTGAAG TTCATAAAGA CTGCAAGAAA GCCACTCAGT ATTCACTATG
  TACTATGTAC TAGTCAGAGT TCTAGCAGTG AACGCAAAAT AAAGTCTTTG TGAAACCTGG
  AACAGACATG TCAGTGGAGC GTGGTCTGTT AAGTCATCTG GACAACCCCT AAAATAGAAA
  GCCACGGGAG GGTTTTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254311	NES13801091	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36488579					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254311	NES13801091	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24525680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17202	CpG island 17202	1233 bp proximal
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5	within coordinates
Rr399585	regulatory region 399585	1825 bp upstream
Rr627233	regulatory region 627233	1066 bp proximal
Rr627234	regulatory region 627234	1879 bp proximal
Tssr59987	transcription start site region 59987	1865 bp downstream