rs36489296 SNP Detail

Summary

• ID
  rs36489296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCAGCT GTGCCCAGGA
  GCCAGGACTT AGGCCCCGGA GTTGCTGGTG AGTGCCCAGG TTGGTCAAGG GAGTTAGGAG
  GCTAGCGGGG GCACTGGGTG GCCATGCTCC CCGATTTCCC ACAGTTTCAG GGAGGGCCTT
  GTTGGGATAG AGCCTCCCCT GTGGCCTGGC TTTGGTGTTA GAACCCGAGG GAGATACAAA
  R
  TCAGCTGGGG AAGTGGAAGC TCTTCTCTCC CTGCCTCAGG TCCAGTATTT GAAAATTCAT
  TTTGAAACCT TTGGAATCAA GTTTGCCTGG CATTTTGTAA TATCTGTTTC TCCTCTGTGC
  TCCAAACAAT GTTGCACTGG TTGCCAATGA GACGGCAGGA ATGTTTGTCT TTAAAAAAAA
  AAAAAAAGAA AAAGCTTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866198	NES14170285	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A	G		G
ss323325386	CHEV_10_59863705	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36489296					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866198	NES14170285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236736 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	1185 bp downstream
Tssr93634	transcription start site region 93634	1152 bp downstream
Tssr93635	transcription start site region 93635	1081 bp downstream
Tssr93636	transcription start site region 93636	193 bp downstream