rs36489479 SNP Detail

Summary

• ID
  rs36489479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26680565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGTAAT AAATTTTAGT
  ATAAGTATGT CCCATATGGT GTTTGAAATA TCCATACCAA AAAGTATTCA GTGTTCACCC
  AAATTCAAAT TTGACTACAT AGCTTATTGT TTTCCTCATT AAATCCCAGC TGTGAGAAAT
  TTCAAAAGTC ACCTTTATTG CCAGTCCCAC ACATGTATGG TCTATGGTTT TGGTATGGTC
  R
  CATGTAGTTG AGCCTGGATT GGAACTACAC TCCAACTCCT AAGTATTAGG ATTGCAGGAG
  TATACTACCA TGCCAAGTTT CTGTGGTGCT GGTGATTGGA CAAAGGGCTT TTTATCTGCT
  AGGCAAGCAA TCTACCAGAT AAGATGTATT CCCAGTGCAT CAACCCCCAT CGTGAAAATC
  CCACTGAAAG AATTGCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442642	NES14434665	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A	G	G	G	G	A	G	G	A	G
ss134696792	ENSMUSSNP6812793	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36489479					SNP	G	G	A	A	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442642	NES14434665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26680565 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	105 bp upstream
Gm65182	predicted gene, 65182	within coordinates