rs36489862 SNP Detail

Summary

• ID
  rs36489862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCACAGG AAAGCCCAGC
  GTCGTTGTGA TCCGGGATTT TCCAATTTTC CCAGAGGATT CGCATCCGGT TGCTGGGAGA
  GGCTCCGTGG GGGGTCCGCG GCCAGGGAGG GGAGTGGGGC CGGGGTGGGG ATAAGAAGTG
  GAGGGTGGGC AGAGCGAGAA TCGCCAACGC TGGAAAGCGC TGAGCTTGCC TGACGCTCTC
  Y
  TCTCCGTACT TGGTTGCCCC CACTCTCTCT GAAAGATTGG GAACCAGAAA GGCTGCTGAG
  TCGGCAGTGC AGGTCTGCTT TGGTGTAAAA TTCGCGGACA AATGTCTTCT AAGACACCCG
  GTGGGGCCAT GGCAACTGAG GGAGTTGGGC AAGAGAGTAA AATTATCTTT TGTTTCTTCC
  AAGTTTCTCT TCCCCTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618302	NES14659881	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	T	C	C	C		C	C	C	T		C
ss135871383	ENSMUSSNP6386915	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss320956931	CHEV_3_127493775	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36489862					SNP	T	T	T	C	T	C	T	T	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618302	NES14659881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	729 bp distal
Cpgi13801	CpG island 13801	within coordinates
Gm56817	predicted gene, 56817	600 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	935 bp distal
Rr584861	regulatory region 584861	1038 bp distal
Rr584862	regulatory region 584862	611 bp distal
Rr584863	regulatory region 584863	43 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1655 bp downstream
Tssr31595	transcription start site region 31595	1643 bp downstream
Tssr31596	transcription start site region 31596	1610 bp downstream
Tssr31597	transcription start site region 31597	1570 bp downstream
Tssr31598	transcription start site region 31598	1547 bp downstream
Tssr31599	transcription start site region 31599	1048 bp downstream
Tssr31600	transcription start site region 31600	980 bp downstream
Tssr31601	transcription start site region 31601	928 bp downstream
Tssr31602	transcription start site region 31602	874 bp downstream
Tssr31603	transcription start site region 31603	856 bp downstream
Tssr31604	transcription start site region 31604	732 bp downstream
Tssr31605	transcription start site region 31605	218 bp downstream
Tssr31606	transcription start site region 31606	32 bp downstream
Tssr31607	transcription start site region 31607	181 bp upstream
Tssr31608	transcription start site region 31608	249 bp upstream
Tssr31609	transcription start site region 31609	300 bp upstream
Tssr31610	transcription start site region 31610	409 bp upstream
Tssr31611	transcription start site region 31611	517 bp upstream
Tssr35598	transcription start site region 35598	1099 bp upstream
Tssr35599	transcription start site region 35599	1017 bp upstream
Tssr35600	transcription start site region 35600	989 bp upstream
Tssr35601	transcription start site region 35601	956 bp upstream
Tssr35602	transcription start site region 35602	639 bp upstream