rs36490113 SNP Detail

Summary

• ID
  rs36490113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81441763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCATTAT CATGGTGGGA
  AGCATGATGA TGTGCAAAGG CCACAACTTC TAATAGTGCT ACCCTCCCAT GAGCCTACAG
  GGGCATTTTC ATTCACACCA CTACACTGGG CAACTGCTAT ACCGCTGAGT TATCCCCTGC
  CCAACTCTCT AAATATTAGT TAAAATTAGA AGTGCATAAA AGCTAAACTT TAATTAGCTG
  R
  AACTTTTGTT CTAAAGTAGT ATCTCAAGTT TTAGAGAAAA AGAGAGGTGA CAAATAGGTA
  AACAAAAAGG ATAAATTTAT TTTAAAAATT CCAGGTGATG TCCCAATGTC AGTGAGTGGT
  TCCGTATCTT GTTCCTTCCA TGACTACATT CAGTTACAGT TGTTCAGTAA AGCACAAGGC
  ATGCGAATGC CCCAATGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50427629	NES14133562	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36490113					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50427629	NES14133562	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81441763 () rs orientation: forward

Symbol	Name	Function Class
Btbd1	BTB domain containing 1	59 bp downstream
Gm45016	predicted gene 45016	within coordinates
Gm45845	predicted gene 45845	1696 bp upstream
Rr168121	regulatory region 168121	1762 bp distal