rs36490591 SNP Detail

Summary

• ID
  rs36490591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20367371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TTGCCTGGAG AGTGTGGGCA
  R
  GGAACCAACT GCTCCCTGAT GCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51076149	NES14368788	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G	G	A	G		G	G	A	G		A
ss324281233	CHEV_13_20275070	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36490591					SNP	A	A	G	A	G	G	G	A	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076149	NES14368788	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20367371 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Rr403595	regulatory region 403595	1862 bp upstream
Rr475519	regulatory region 475519	1410 bp distal
Rr475520	regulatory region 475520	238 bp distal
Rr475521	regulatory region 475521	875 bp proximal
Tssr118580	transcription start site region 118580	1739 bp upstream
Tssr118581	transcription start site region 118581	1797 bp upstream