rs36492477 SNP Detail

Summary

• ID
  rs36492477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10584699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGTGGG TTAATGCCGC
  AGAGGTTGTA GTGTTAATCC TAGCTTCATT TCTTAGTCAT CTCATGTAAA GCACCTTTGA
  AAGCCTTGAT TTCCCCGTTT ACAAATGGGC GTAACGGTGC CCTCTCCCGT AGAGTACTGT
  GAAGATAAAA TGATTGATTT TCACAGAGTA AGCACATCCT GTTAGCTTAA CAGTTTCATT
  R
  CTATTAGAAC AATTGTAATT CAACTGTATC CAAAACAAAA AAACCCCAAA AAACCATGAA
  TGTTTTTGAG GACTGTTAGT AAAGATCTAT TGTAGCTTTG CTTGTTATTA CTACAGATTA
  CTTTCTCTCC ACATACATAG GTGAAGGAGA AACATTTCAT TCTCTTCTCA AATCTTGAAT
  AGAATGAGGT GAATTATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601252	NES13642985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36492477					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601252	NES13642985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10584699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	1282 bp distal
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	within coordinates
Rr362968	regulatory region 362968	98 bp distal
Rr405857	regulatory region 405857	1679 bp downstream
Tkfc	triokinase, FMN cyclase	1681 bp upstream
Tssr155068	transcription start site region 155068	1781 bp downstream
Tssr155069	transcription start site region 155069	1721 bp downstream
Tssr155070	transcription start site region 155070	1691 bp downstream
Tssr155071	transcription start site region 155071	1640 bp downstream
Tssr155072	transcription start site region 155072	1387 bp downstream
Tssr155073	transcription start site region 155073	1047 bp downstream
Tssr155074	transcription start site region 155074	457 bp upstream
Tssr155075	transcription start site region 155075	912 bp upstream
Tssr158204	transcription start site region 158204	1930 bp upstream
Tssr158205	transcription start site region 158205	1869 bp upstream
Tssr158206	transcription start site region 158206	1865 bp upstream
Tssr158207	transcription start site region 158207	1420 bp upstream