rs36492568 SNP Detail

Summary

• ID
  rs36492568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGGAGCA GGAAGCGTTT
  TCGGCGCGGG GACGCACTGG GTGTGGAGCA GTTGGACCAC GGGGTGTCCT CGTCGCTGGA
  GGGCGTAATC TCAATGGACG GCAGTTGCAG GAACTCCTTG CCGGGGGCCA GGACGCCGGG
  TAGGTCCGGG GCTACCAACC CCGCCTCCAG GCTCTGCTCC TGCACGTTCT TCATCCGGCG
  Y
  ATCTTAAAGC GCCGGCGGCG AAGCGTGGGG GTGGACGAGC TGGACCACAC CGCGCTGCCC
  TCGGGTGCGC CCTGAGGTTC TGGCACCTGC AGGGCGGGCA GCTGCAGGTT CTCCATCATG
  TTGGCCGCCG GCATCGGGGT CCCTGGCCGC TGCTCCGTGC CCTCCGCCTG CAGCCTGGCT
  CGAGGCTTCC TCTCTCGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677586	NES14010798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36492568					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677586	NES14010798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	111 bp distal
Rr676840	regulatory region 676840	124 bp proximal
Rr676841	regulatory region 676841	299 bp proximal
Tssr84449	transcription start site region 84449	215 bp downstream
Tssr84450	transcription start site region 84450	355 bp upstream
Tssr88934	transcription start site region 88934	152 bp upstream
Tssr88935	transcription start site region 88935	101 bp upstream
Tssr88936	transcription start site region 88936	80 bp upstream
Tssr88937	transcription start site region 88937	16 bp upstream
Tssr88938	transcription start site region 88938	238 bp downstream
Tssr88939	transcription start site region 88939	245 bp downstream
Tssr88940	transcription start site region 88940	301 bp downstream
Tssr88941	transcription start site region 88941	583 bp downstream
Tssr88942	transcription start site region 88942	601 bp downstream
Tssr88943	transcription start site region 88943	616 bp downstream
Tssr88944	transcription start site region 88944	659 bp downstream
Tssr88945	transcription start site region 88945	694 bp downstream
Tssr88946	transcription start site region 88946	776 bp downstream
Tssr88947	transcription start site region 88947	804 bp downstream
Tssr88948	transcription start site region 88948	851 bp downstream
Tssr88949	transcription start site region 88949	1936 bp downstream