rs36492646 SNP Detail

Summary

• ID
  rs36492646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41032171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGGAAT ACTGAGAAAT
  TAAAAATTTT AAGACAAAAT GATTTACCTC TCTTGGTATC CCGGGGCGGA GGCGGGGGGC
  GAATAACAAG CTAATTCACA TAAATAAAAA CAGAACATAC CATTTGCAGA GCCAGAAGGA
  CCTAGTAAAA GGACAGACCT GTGATTTGGG TCACACAACG ACCTTCTGAA CAAAAGGAAA
  M
  CTTGATGAAC ACATGTACCT CAAACTCAGA ATGAAGTGAA TTATTAAAAT CGTGGGCAGA
  TGTAAGACCA GACAAAGCAC ACCAGGCACC AGCATCGAAG CCACATGAGC TCTGTTCTAC
  GGCAGATGAT ACATCAAACC CAGAGCTACT TTTCAACCCA GTGTGCCTCA AATGTTTAAA
  GAGGGAATGA TTAGGAATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51242070	NES14285543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A		C	C	A	C
ss148988449	ENSMUSSNP3889943	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36492646					SNP	C	C	C	C	C	C	A	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242070	NES14285543	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41032171 () rs orientation: forward

Symbol	Name	Function Class
Gm70541	predicted gene, 70541	1684 bp downstream