rs36492776 SNP Detail

Summary

• ID
  rs36492776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70706026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGGATC AGGAGGGCGG
  GGAGGGTGGA CTCCCTGAGA CAAGACAAGC AGGTAGAGAC AGATTAGAGG GAGGGATTGT
  CATAGTAACA TTTTCCGAGG TGACAGAGAT GATACACAGG CAGCTGGACT TCTGTGAAGG
  ACAGAGGAGC TGGCAGACCC ACAGGGCCAC ACCTCTGAGG GACCGGTGAA TGGCTGGCTA
  Y
  CAGAGACAGT GCTGGTAGAC AGTCAGGTAC CTCATGGGAT GGGCCAAGAG ATCTGGGATC
  CTGGGAACTA TGTAGAGAAG AGGATTTGAC ACCCCCCACC CACCCACCCA AGGCCCTTCC
  CCTCTGCTGA CAGCATTGTT GTGGTCGTGG CCTGCTGCCT TGTCTTCTGT CCCTGGGTGG
  GGCACACCCT TCTGTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51530272	NES14627577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36492776					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530272	NES14627577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70706026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1301 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1026 bp distal
Rr290303	regulatory region 290303	1375 bp proximal
Rr404191	regulatory region 404191	1729 bp upstream
Tssr4470	transcription start site region 4470	1965 bp downstream
Tssr126425	transcription start site region 126425	1989 bp downstream
Tssr126426	transcription start site region 126426	1853 bp downstream
Tssr126427	transcription start site region 126427	1738 bp downstream
Tssr126428	transcription start site region 126428	1726 bp downstream
Tssr126429	transcription start site region 126429	967 bp downstream
Tssr126430	transcription start site region 126430	899 bp downstream
Tssr126431	transcription start site region 126431	741 bp downstream
Tssr126432	transcription start site region 126432	703 bp downstream