rs36492875 SNP Detail

Summary

• ID
  rs36492875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109685556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAATTT CACCTGCCCC
  TCTTGGCTCT GTGCATTGTT AGGTCCAGAA TGCCCACCTC CTGGGACAGG CACAGTCAGT
  AAGGGAAACC AGGAAGCGCA CTTTTAGGCT CTGTTGTAGG ATGGAGTTCA GATAAGAGAA
  GCCCAGAAAA TTATAAAATC CAAACAATAG CAATTTAATC AAACAGCCAA TACAAGCCAA
  R
  CCACCAATTC CTTCTGGAGA CATGTGTCTA GATGTCAGCT GCAGGTGTCT TTACCAAGAT
  ATGTCAGTTG GTGAGTGTCA CATAACACTA TGACTCTAGA AAAGCCTGGG CCCCAGATCA
  GCTCTTTACC AGCATCCTGC CATGTCTACG GGCTGTGCTC TTTGATGCCA TTAGCAAGGC
  CTTGAGGACT GGTGGGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51052967	NES14374721	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36492875					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052967	NES14374721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109685556 () rs orientation: forward

Symbol	Name	Function Class
Gm59461	predicted gene, 59461	51 bp downstream
Gm60279	predicted gene, 60279	505 bp downstream
Mir495	microRNA 495	306 bp downstream
Mir543	microRNA 543	1789 bp downstream
Mir666	microRNA 666	1939 bp downstream
Mir667	microRNA 667	884 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc45	microRNA cluster 45, including Mir666 through Mir543	1789 bp distal
Tssr115176	transcription start site region 115176	300 bp downstream