rs36493008 SNP Detail

Summary

• ID
  rs36493008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127542963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGCTTC AGTCAAACCC
  AGTGCTGGAA GGTGAGCCGC TACTCTCTAC TCTCTTTATC CCCAGAGTCC CTTAGCCTTA
  GTAGACCCTC TTCCAAAATT GTGGTTTCCC TTCAGCATAA AAGCTACCAT TGGTCAGCAG
  ACTGGAAGGA GCTGTGCCCT CAGGTCTTTC CTCCTCTGGG CTCCAACTCT TGGGAGCTTC
  R
  GCCCCTCACT TTCTCTTTCT TCCCGTCCAC AGCATTTGGC AATGCCAAGA CCATCCGCAA
  TAACAACTCC TCTCGATTTG TGAGTGAACA CATCTGCCCC GGAGGAGTAT GGGGCGGGTG
  TGGGGGTGGG GTGGGGTGGG GTGGGCAGGA AGAACTCGGA GGTGGGACTG AAAGTAAGAA
  GGGCAGAACA AAGCTCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947125	NES14150398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36493008					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947125	NES14150398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127542963 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213603	regulatory region 213603	1963 bp distal
Rr213604	regulatory region 213604	638 bp proximal
Rr221966	regulatory region 221966	206 bp distal
Rr226492	regulatory region 226492	239 bp proximal
Tssr3395	transcription start site region 3395	1803 bp downstream
Tssr96246	transcription start site region 96246	288 bp downstream
Tssr96247	transcription start site region 96247	255 bp downstream