rs36493524 SNP Detail

Summary

• ID
  rs36493524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69468502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGGGG GACCCCAAAA
  CACTGTGAAC GACAGTAGTG GTATAAAAAT CCATGTCGTA AGTATGTCAG TCTGTTTGGG
  ACAGGGTCAC CGTATCCCTG AGGAATCACG TGGTTAATCT CATATCACCT AAAGCCTAGG
  TAGGTTCTTT TAGTTGCATG TGAACTATGG ACAGTCATTT CAAGACAGAG GAAGAATTCA
  Y
  AGAAAGACAA GTCCGTGAAT ACCAGTCATA GGACTTAGCA ATACAGTCTG CAGCTCATGA
  TTCAACTGTC ACCTACACCA CTAAACTTGG AGGCTTTTCT TAAGCTTTAC CATGCTAGCA
  TTTCCTCTTT ATCGCAAAGC TTAAGCCAGC CCTCTGAAAT GAATATCTAA AGGCTAAAAG
  AAGTAGCATG TAGACGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51265558	NES14271268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36493524					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51265558	NES14271268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69468502 () rs orientation: forward

Symbol	Name	Function Class
Gm28497	predicted gene 28497	1883 bp upstream
Gm69966	predicted gene, 69966	413 bp downstream