rs36493958 SNP Detail

Summary

• ID
  rs36493958
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37690869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCACTAG GGTCTTTGAT
  GGATAAGGTC TTTGCTTCCA TGTTGGCAGA TGTTGGAGCC TTCATGCTGG GTTTTAATGC
  TGTATCTACC ATTGTGTCAG TTGTGCTAAG GTCTGGGGGT CTGTTCGTTA CACTTCAAAC
  CACAGACACA CTTGGAGTGA TAACTATCTA CCAGTTGGGA AAACAGCAAG CATGAAAAGA
  S
  CTATTTTTAT TGATCTAAAG AAGCATGAAA CAGTAGGAAA TTTATGTTTA AGTCATAACG
  GTAGCACCCA CCCTTAATCC CAGCATGTGA GAAGCAGAGA GTCAAATGAT TGTCAGTTCC
  AGGCAAACCT GGTCTACATC TAGGGCTACA TAGAGAGACC CTGTCCTAAA CAGACAAACA
  AAACAGAAAA AGAAATAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51601455	NES14848665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36493958					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601455	NES14848665	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37690869 () rs orientation: forward

Symbol	Name	Function Class
Gm38791	predicted gene, 38791	686 bp upstream
Rr628708	regulatory region 628708	289 bp proximal